Research workbench
Solution structure of Rtt103 CTD-interacting domain bound to a Ser2Ser7 phosphorylated CTD peptide
Analyse Solution structure of Rtt103 CTD-interacting domain bound to a Ser2Ser7… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5M9D
- Type
- protein
- Length
- 154 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- NOT
- Source
- Saccharomyces cerevisiae S288c; SYNTHETIC CONSTRUCT
- Molecule
- Regulator of Ty1 transposition protein 103; Thr-ser-pro-sep-tyr-sep-pro-thr-ser-pro-sep-ty…
- UniProt
- Q05543
Structure
solution nmr · resolution NOT · 2 distinct chains · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulator of Ty1 transposition protein 103 | protein | 138 | 74% helix, 0% strand | Q05543 |
| B | Thr-ser-pro-sep-tyr-sep-pro-thr-ser-pro-sep-tyr-sep-pro-thr-ser | protein | 16 | 0% helix, 0% strand | — |
Interfaces
1 interface between chains.
- A–B · 849 Ų buried · 30 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (phosphorylation).
Compared structures
- 5M9D · Solution structure of RTT103 ctd-interacting domain bound to a SER2SER7 phosphorylated… · the same entry in another collection · chain A against A, TM-score 1.00
- Q05543 · AlphaFold monomer V2.0 prediction for regulator of TY1 transposition protein 103 (Q05543) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05543
- Elsewhere: RCSB PDB 5M9D · PDBe 5M9D · UniProt Q05543
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