MolNFT v1 · #414681 · protein
AlphaFold monomer V2.0 prediction for regulator of TY1 transposition protein 103 (Q05543)
Q05543: “AlphaFold monomer V2.0 prediction for regulator of TY1 transposition protein 103 (Q05543)”. 2 pockets (best druggability 0.55). MolNFT v1 #414681 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q05543
- Type
- protein
- Length
- 409 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7012c0b45c68a2c067644b9d3e5DDa06892c6957
- Molecule
- Regulator of TY1 transposition protein 103
- UniProt
- Q05543
- Pockets
- 2 · best druggability 0.55
Structure
1 distinct chain · 52% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulator of TY1 transposition protein 103 | protein | 409 | 52% helix, 0% strand | Q05543 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.55 | 0.86 | 13 | empty |
| 2 | 146 | 0.38 | 0.72 | 21 | empty |
Compared structures
- 2KM4 · Solution structure of Rtt103 CTD interacting domain · an experimental structure of the same protein · chain A against A, TM-score 0.33
- 2KM4 · Solution structure of RTT103 ctd interacting domain · an experimental structure of the same protein · chain A against A, TM-score 0.33
- 5M9D · Solution structure of RTT103 ctd-interacting domain bound to a SER2SER7 phosphorylated… · an experimental structure of the same protein · chain A against A, TM-score 0.33
- 5M9D · Solution structure of Rtt103 CTD-interacting domain bound to a Ser2Ser7 phosphorylated… · an experimental structure of the same protein · chain A against A, TM-score 0.33
- 5LVF · Solution structure of RTT103 ctd-interacting domain bound to a THR4 phosphorylated ctd… · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 2L0I · Solution structure of Rtt103 CTD-interacting domain bound to a Ser2 phosphorylated CTD… · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 2L0I · Solution structure of RTT103 ctd-interacting domain bound to a SER2 phosphorylated ctd… · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 5WOZ · NMR solution structure of RTT103 (rtt) protein using two 4D-spectra · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 5M48 · Coiled coil domain of RTT103P · an experimental structure of the same protein · chain A against A, TM-score 0.27
- 5M48 · Coiled coil domain of Rtt103p · an experimental structure of the same protein · chain A against A, TM-score 0.27
- 9FMS · Cryo-EM structure of S. cerevisiae Rai1-Rat1-Rtt103(252-273) complex. · an experimental structure of the same protein · chain A against D, TM-score 0.03
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05543
- Elsewhere: UniProt Q05543 · AlphaFold DB Q05543
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