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Crystal Structures of MOMP from Campylobacter jejuni

Analyse Crystal Structures of MOMP from Campylobacter jejuni in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5LDV
Type: protein
Length: 403 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.1
Source: Campylobacter jejuni
Molecule: MOMP porin
UniProt: Q659I5
Ligands: CA
Pockets: 4 · best druggability 0.67

Structure

x-ray diffraction · resolution 2.1 · 1 distinct chain · 7% helix, 60% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MOMP porin	protein	403	7% helix, 60% strand	Q659I5

Ligands and binding sites

CA · Calcium ion · metal · chains A
OCT · N-octane · additive · 4 copies · chains A
1PE · Pentaethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	735	0.67	0.76	70	empty
2	83	0.47	0.81	25	1PE
3	117	0.40	0.75	23	empty
4	69	0.30	0.74	21	1PE

Compared structures

5LDV · Crystal structures of momp from campylobacter jejuni · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q659I5
Elsewhere: RCSB PDB 5LDV · PDBe 5LDV · UniProt Q659I5

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