Research workbench
The structure of the pentameric shell protein MSM0273 from the RMM microcompartment
Analyse The structure of the pentameric shell protein MSM0273 from the RMM… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5L37
- Type
- protein
- Length
- 397 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.6
- Source
- Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
- Molecule
- MSM0273
- UniProt
- A0QP50
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · resolution 1.6 · 3 distinct chains · 6% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E | MSM0273 | protein | 78 | 6% helix, 47% strand | A0QP50 |
| C | MSM0273 | protein | 86 | 6% helix, 41% strand | A0QP50 |
| D | MSM0273 | protein | 77 | 6% helix, 47% strand | A0QP50 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 848 | 0.68 | 0.75 | 70 | empty |
Interfaces
5 interfaces between chains.
- B–C · 1204 Ų buried · 29 hydrogen bonds · protein-protein
- A–E · 977 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 934 Ų buried · 16 hydrogen bonds · protein-protein
- D–E · 931 Ų buried · 14 hydrogen bonds · protein-protein
- C–D · 915 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5L37 · The structure of the pentameric shell protein MSM0273 from the rmm microcompartment · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QP50
- Elsewhere: RCSB PDB 5L37 · PDBe 5L37 · UniProt A0QP50
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