MolNFT v1 · #125242 · protein

The structure of the pentameric shell protein MSM0273 from the rmm microcompartment

5L37: “The structure of the pentameric shell protein MSM0273 from the rmm microcompartment”. X-ray diffraction, 1 pocket (best druggability 0.68). MolNFT v1 #125242 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5L37
Type: protein
Length: 397 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MSM0273
UniProt: A0QP50
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 3 distinct chains · 6% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, E	MSM0273	protein	78	6% helix, 47% strand	A0QP50
C	MSM0273	protein	86	6% helix, 41% strand	A0QP50
D	MSM0273	protein	77	6% helix, 47% strand	A0QP50

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	848	0.68	0.75	70	empty

Interfaces

5 interfaces between chains.

B–C · 1204 Å² buried · 29 hydrogen bonds · protein-protein
A–E · 977 Å² buried · 16 hydrogen bonds · protein-protein
A–B · 934 Å² buried · 16 hydrogen bonds · protein-protein
D–E · 931 Å² buried · 14 hydrogen bonds · protein-protein
C–D · 915 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

5L37 · The structure of the pentameric shell protein MSM0273 from the RMM microcompartment · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0QP50
Elsewhere: RCSB PDB 5L37 · PDBe 5L37 · UniProt A0QP50

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