Research workbench
Shigella flexneri Effector IpaH1880
Analyse Shigella flexneri Effector IpaH1880 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KH1
- Type
- protein
- Length
- 554 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4
- Source
- Shigella flexneri
- Molecule
- Invasion plasmid antigen
- UniProt
- Q83R64
- Pockets
- 7 · best druggability 0.79
Structure
x-ray diffraction · resolution 3.4 · 1 distinct chain · 40% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Invasion plasmid antigen | protein | 554 | 40% helix, 6% strand | Q83R64 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.79 | 0.97 | 40 | empty |
| 2 | 123 | 0.78 | 0.96 | 27 | empty |
| 3 | 55 | 0.71 | 0.97 | 16 | empty |
| 4 | 307 | 0.62 | 0.79 | 54 | empty |
| 5 | 124 | 0.51 | 0.81 | 18 | empty |
Compared structures
- 5KH1 · Shigella flexneri effector IPAH1880 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83R64
- Elsewhere: RCSB PDB 5KH1 · PDBe 5KH1 · UniProt Q83R64
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