MolNFT v1 · #124499 · protein

Shigella flexneri effector IPAH1880

5KH1 · Invasion plasmid antigen: “Shigella flexneri effector IPAH1880”. X-ray diffraction, 7 pockets (best druggability 0.79). MolNFT v1 #124499 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KH1
Type: protein
Length: 554 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Invasion plasmid antigen
UniProt: Q83R64
Pockets: 7 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Invasion plasmid antigen	protein	554	40% helix, 6% strand	Q83R64

Pockets

7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.79	0.97	40	empty
2	123	0.78	0.96	27	empty
3	55	0.71	0.97	16	empty
4	307	0.62	0.79	54	empty
5	124	0.51	0.81	18	empty

Compared structures

5KH1 · Shigella flexneri Effector IpaH1880 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q83R64
Elsewhere: RCSB PDB 5KH1 · PDBe 5KH1 · UniProt Q83R64

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