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Crystal structure of Burkholderia glumae ToxA
Analyse Crystal structure of Burkholderia glumae ToxA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JE6
- Type
- protein
- Length
- 468 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.571
- Source
- Burkholderia glumae
- Molecule
- Methyl transferase
- UniProt
- Q9LBJ0
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · resolution 1.571 · 1 distinct chain · 38% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Methyl transferase | protein | 234 | 38% helix, 29% strand | Q9LBJ0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.71 | 0.90 | 31 | empty |
| 2 | 164 | 0.68 | 0.87 | 32 | empty |
| 3 | 438 | 0.63 | 0.77 | 52 | empty |
| 4 | 238 | 0.56 | 0.78 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 1916 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 5JE6 · Crystal structure of burkholderia glumae toxa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LBJ0
- Elsewhere: RCSB PDB 5JE6 · PDBe 5JE6 · UniProt Q9LBJ0
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