MolNFT v1 · #123248 · protein
Crystal structure of burkholderia glumae toxa
5JE6 · Methyl transferase: “Crystal structure of burkholderia glumae toxa”. X-ray diffraction, 4 pockets (best druggability 0.71). MolNFT v1 #123248 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JE6
- Type
- protein
- Length
- 468 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methyl transferase
- UniProt
- Q9LBJ0
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Methyl transferase | protein | 234 | 38% helix, 29% strand | Q9LBJ0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.71 | 0.90 | 31 | empty |
| 2 | 164 | 0.68 | 0.87 | 32 | empty |
| 3 | 438 | 0.63 | 0.77 | 52 | empty |
| 4 | 238 | 0.56 | 0.78 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 1916 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 5JE6 · Crystal structure of Burkholderia glumae ToxA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LBJ0
- Elsewhere: RCSB PDB 5JE6 · PDBe 5JE6 · UniProt Q9LBJ0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.