Research workbench
Crystal structure of RnTmm mutant Y207S
Analyse Crystal structure of RnTmm mutant Y207S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IQ1
- Type
- protein
- Length
- 890 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.75
- Source
- Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM)
- Molecule
- Flavin-containing monooxygenase
- UniProt
- A3SLM3
- Ligands
- NAP, FAD
- Pockets
- 8 · best druggability 0.91
Structure
x-ray diffraction · resolution 1.75 · 1 distinct chain · 31% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Flavin-containing monooxygenase | protein | 445 | 31% helix, 20% strand | A3SLM3 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 2 copies · chains A, B
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 946 | 0.91 | 0.94 | 136 | FAD |
| 2 | 334 | 0.83 | 0.92 | 55 | empty |
| 3 | 163 | 0.53 | 0.79 | 21 | empty |
| 4 | 132 | 0.49 | 0.79 | 17 | empty |
| 5 | 90 | 0.40 | 0.77 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1794 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 5IQ1 · Crystal structure of rntmm mutant Y207S · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3SLM3
- Elsewhere: RCSB PDB 5IQ1 · PDBe 5IQ1 · UniProt A3SLM3
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