Research workbench
Solution structure of an 11-mer DNA duplex containing 6-thioguanine opposite thymine
Analyse Solution structure of an 11-mer DNA duplex containing 6-thioguanine opposite… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KBM
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- NOT
- Molecule
- 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3'; 5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3'
Structure
solution nmr · resolution NOT · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3' | dna | 11 | — | — |
| B | 5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3' | dna | 11 | — | — |
Interfaces
1 interface between chains.
- A–B · 550 Ų buried · 64 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 1KBM · Solution structure of an 11-mer DNA duplex containing 6-thioguanine opposite thymine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KBM · PDBe 1KBM
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.