MolNFT v1 · #12266 · DNA
Solution structure of an 11-mer DNA duplex containing 6-thioguanine opposite thymine
1KBM · 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3': “Solution structure of an 11-mer DNA duplex containing 6-thioguanine opposite thymine”. Solution nmr. MolNFT v1 #12266 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1KBM
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3'; 5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3' | dna | 11 | — | — |
| B | 5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3' | dna | 11 | — | — |
Interfaces
1 interface between chains.
- A–B · 550 Ų buried · 64 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 1KBM · Solution structure of an 11-mer DNA duplex containing 6-thioguanine opposite thymine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KBM · PDBe 1KBM
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