Research workbench
Crystal structure of Ubc9 (K48A/K49A/E54A) complexed with Fragment 6
Analyse Crystal structure of Ubc9 (K48A/K49A/E54A) complexed with Fragment 6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5F6D
- Type
- protein
- Length
- 156 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.553
- Source
- Homo sapiens
- Molecule
- SUMO-conjugating enzyme UBC9
- EC
- 6.3.2.-
- UniProt
- P63279
- Ligands
- 5VJ
Structure
x-ray diffraction · resolution 1.553 · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SUMO-conjugating enzyme UBC9 (EC 6.3.2.-) | protein | 156 | 35% helix, 20% strand | P63279 |
Ligands and binding sites
- 5VJ · 6~{H}-benzo[c][1,2]benzothiazine 5,5-dioxide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5F6D · Crystal structure of UBC9 (K48A/K49A/E54A) complexed with fragment 6 · the same entry in another collection · chain A against A, TM-score 1.00
- P63279 · AlphaFold monomer V2.0 prediction for sumo-conjugating enzyme UBC9 (P63279) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63279
- Elsewhere: RCSB PDB 5F6D · PDBe 5F6D · UniProt P63279
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