Research workbench
Crystal structure of the FAD dependent oxidoreductase PA4991 from Pseudomonas aeruginosa
Analyse Crystal structure of the FAD dependent oxidoreductase PA4991 from Pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EZ7
- Type
- protein
- Length
- 363 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.4
- Source
- Pseudomonas aeruginosa PAO1
- Molecule
- flavoenzyme PA4991
- UniProt
- Q9HUH4
- Ligands
- FAD, HG
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · resolution 2.4 · 1 distinct chain · 28% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | flavoenzyme PA4991 | protein | 363 | 28% helix, 29% strand | Q9HUH4 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- HG · Mercury (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 683 | 0.76 | 0.82 | 73 | FAD |
| 2 | 72 | 0.39 | 0.78 | 19 | empty |
Compared structures
- 5EZ7 · Crystal structure of the FAD dependent oxidoreductase PA4991 from pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HUH4 · AlphaFold monomer V2.0 prediction for probable FAD-dependent oxidoreductase PA4991… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HUH4
- Elsewhere: RCSB PDB 5EZ7 · PDBe 5EZ7 · UniProt Q9HUH4
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