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Rat prestin STAS domain in complex with nitrate
Analyse Rat prestin STAS domain in complex with nitrate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EUW
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.81
- Source
- Rattus norvegicus
- Molecule
- Prestin,Prestin
- UniProt
- Q9EPH0
- Ligands
- NO3
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · resolution 1.81 · 1 distinct chain · 35% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prestin,Prestin | protein | 129 | 35% helix, 22% strand | Q9EPH0 |
Ligands and binding sites
- NO3 · Nitrate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
- PG4 · Tetraethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.61 | 0.89 | 14 | empty |
| 2 | 57 | 0.39 | 0.80 | 15 | NO3 |
| 3 | 75 | 0.30 | 0.73 | 17 | PG4 |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9EPH0
- Elsewhere: RCSB PDB 5EUW · PDBe 5EUW · UniProt Q9EPH0
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