Research workbench
Crystal structure of Acinetobacter baumannii OccAB3
Analyse Crystal structure of Acinetobacter baumannii OccAB3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DL7
- Type
- protein
- Length
- 402 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.75
- Source
- Acinetobacter baumannii AB307-0294
- Molecule
- Porin
- UniProt
- A0A0D5YKR4
- Ligands
- CA
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · resolution 1.75 · 1 distinct chain · 2% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Porin | protein | 402 | 2% helix, 58% strand | A0A0D5YKR4 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 883 | 0.76 | 0.80 | 122 | empty |
| 2 | 62 | 0.37 | 0.79 | 20 | empty |
Compared structures
- 5DL7 · Crystal structure of acinetobacter baumannii OCCAB3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D5YKR4
- Elsewhere: RCSB PDB 5DL7 · PDBe 5DL7 · UniProt A0A0D5YKR4
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