Research workbench
Candida albicans superoxide dismutase 5 (SOD5), apo
Analyse Candida albicans superoxide dismutase 5 (SOD5), apo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CU9
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.48
- Source
- Candida albicans (strain SC5314 / ATCC MYA-2876)
- Molecule
- Cell surface Cu-only superoxide dismutase 5
- EC
- 1.15.1.1
- UniProt
- Q5AD07
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · resolution 1.48 · 1 distinct chain · 10% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell surface Cu-only superoxide dismutase 5 (EC 1.15.1.1) | protein | 153 | 10% helix, 35% strand | Q5AD07 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.35 | 0.78 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5CU9 · Candida albicans superoxide dismutase 5 (SOD5), apo · the same entry in another collection · chain A against A, TM-score 1.00
- Q5AD07 · AlphaFold monomer V2.0 prediction for cell surface cu-only superoxide dismutase 5 (Q5AD07) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5AD07
- Elsewhere: RCSB PDB 5CU9 · PDBe 5CU9 · UniProt Q5AD07
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