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Structure and function of the Escherichia coli Tol-Pal stator protein TolR

Analyse Structure and function of the Escherichia coli Tol-Pal stator protein TolR in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5BY4
Type: protein
Length: 105 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.702
Source: Escherichia coli
Molecule: Protein TolR
UniProt: P0ABV6
Ligands: NA
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · resolution 1.702 · 1 distinct chain · 31% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein TolR	protein	105	31% helix, 24% strand	P0ABV6

Ligands and binding sites

NA · Sodium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	166	0.45	0.75	26	empty

Compared structures

5BY4 · Structure and function of the escherichia COLI tol-pal stator protein tolr · the same entry in another collection · chain A against A, TM-score 1.00
P0ABV6 · AlphaFold monomer V2.0 prediction for tol-pal system protein tolr (P0ABV6) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ABV6
Elsewhere: RCSB PDB 5BY4 · PDBe 5BY4 · UniProt P0ABV6

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