MolNFT v1 · #114715 · protein
Structure and function of the escherichia COLI tol-pal stator protein tolr
5BY4: “Structure and function of the escherichia COLI tol-pal stator protein tolr”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.45). MolNFT v1 #114715 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5BY4
- Type
- protein
- Length
- 105 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein tolr
- UniProt
- P0ABV6
- Ligands
- NA
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein tolr | protein | 105 | 31% helix, 24% strand | P0ABV6 |
Ligands and binding sites
- NA · Sodium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.45 | 0.75 | 26 | empty |
Compared structures
- 5BY4 · Structure and function of the Escherichia coli Tol-Pal stator protein TolR · the same entry in another collection · chain A against A, TM-score 1.00
- P0ABV6 · AlphaFold monomer V2.0 prediction for tol-pal system protein tolr (P0ABV6) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0ABV6
- Elsewhere: RCSB PDB 5BY4 · PDBe 5BY4 · UniProt P0ABV6
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