Research workbench
Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in complex with delphinidin
Analyse Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4REM
- Type
- protein
- Length
- 446 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.55
- Source
- Clitoria ternatea
- Molecule
- UDP-glucose:anthocyanidin 3-O-glucosyltransferase
- EC
- 2.4.1.115
- UniProt
- A4F1R4
- Ligands
- DLM
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · resolution 2.55 · 1 distinct chain · 45% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UDP-glucose:anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) | protein | 446 | 45% helix, 14% strand | A4F1R4 |
Ligands and binding sites
- DLM · 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium · ligand · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1191 | 0.78 | 0.79 | 119 | DLM, GOL |
| 2 | 80 | 0.31 | 0.73 | 13 | empty |
Compared structures
- 4REM · Crystal structure of udp-glucose: anthocyanidin 3-O- glucosyltransferase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4F1R4
- Elsewhere: RCSB PDB 4REM · PDBe 4REM · UniProt A4F1R4
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