Research workbench
The crystal structure of a LacI family transcriptional regulator from Bifidobacterium animalis subsp. lactis DSM 10140
Analyse The crystal structure of a LacI family transcriptional regulator from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4O5A
- Type
- protein
- Length
- 271 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.777
- Source
- Bifidobacterium animalis subsp. lactis
- Molecule
- LacI family transcription regulator
- UniProt
- C6AGK7
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · resolution 1.777 · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LacI family transcription regulator | protein | 271 | 42% helix, 21% strand | C6AGK7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 536 | 0.70 | 0.79 | 56 | empty |
Modifications
Observed in the structure: 12 modified (engineered, oxidation).
Compared structures
- 4O5A · The crystal structure of a laci family transcriptional regulator from bifidobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6AGK7
- Elsewhere: RCSB PDB 4O5A · PDBe 4O5A · UniProt C6AGK7
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