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Crystal Structure of the Apo ectoine hydroxylase ECTD from Salibacillus salexigens

Analyse Crystal Structure of the Apo ectoine hydroxylase ECTD from Salibacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4NMI
Type: protein
Length: 280 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.78
Source: Virgibacillus salexigens
Molecule: EctD
EC: 1.14.11.-
UniProt: Q2TDY4
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · resolution 1.78 · 1 distinct chain · 29% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	EctD (EC 1.14.11.-)	protein	280	29% helix, 22% strand	Q2TDY4

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	441	0.75	0.85	50	empty
2	97	0.43	0.78	19	empty

Compared structures

4NMI · Crystal structure of the apo ectoine hydroxylase ectd from salibacillus salexigens · the same entry in another collection · chain A against A, TM-score 1.00
Q2TDY4 · AlphaFold monomer V2.0 prediction for ectoine dioxygenase (Q2TDY4) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2TDY4
Elsewhere: RCSB PDB 4NMI · PDBe 4NMI · UniProt Q2TDY4

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