Research workbench
AlphaFold monomer V2.0 prediction for membrane protein insertase yidc (Q9X1H2)
Analyse AlphaFold monomer V2.0 prediction for membrane protein insertase yidc (Q9X1H2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9X1H2
- Type
- protein
- Length
- 445 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf87a97E0A4bB354D834857B14296240B167cbe70
- Molecule
- Membrane protein insertase yidc
- UniProt
- Q9X1H2
- Pockets
- 6 · best druggability 0.72
Structure
1 distinct chain · 45% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane protein insertase yidc | protein | 445 | 45% helix, 24% strand | Q9X1H2 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 710 | 0.72 | 0.78 | 47 | empty |
| 2 | 205 | 0.56 | 0.79 | 22 | empty |
| 3 | 218 | 0.53 | 0.76 | 24 | empty |
| 4 | 91 | 0.41 | 0.78 | 21 | empty |
| 5 | 57 | 0.36 | 0.79 | 15 | empty |
Compared structures
- 6Y86 · Active yidc insertase crystal structure with the first transmembrane domain resolved · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 6Y86 · Active YidC insertase crystal structure with the first transmembrane domain resolved · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 5Y83 · Crystal structure of YidC from Thermotoga maritima · an experimental structure of the same protein · chain A against A, TM-score 0.75
- 5Y83 · Crystal structure of yidc from thermotoga maritima · an experimental structure of the same protein · chain A against A, TM-score 0.75
- 5Y82 · Crystal structure of the periplasmic domain of the Thermotoga maritima YidC · an experimental structure of the same protein · chain A against A, TM-score 0.45
- 5Y82 · Crystal structure of the periplasmic domain of the thermotoga maritima yidc · an experimental structure of the same protein · chain A against D, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1H2
- Elsewhere: UniProt Q9X1H2 · AlphaFold DB Q9X1H2
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