MolNFT v1 · #140350 · protein

Crystal structure of yidc from thermotoga maritima

5Y83 · Membrane protein insertase yidc: “Crystal structure of yidc from thermotoga maritima”. X-ray diffraction, 4 pockets (best druggability 0.73). MolNFT v1 #140350 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Y83
Type: protein
Length: 342 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Membrane protein insertase yidc
UniProt: Q9X1H2
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Membrane protein insertase yidc	protein	342	31% helix, 27% strand	Q9X1H2

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.73	0.95	18	empty
2	268	0.60	0.79	24	empty
3	287	0.58	0.77	35	empty
4	71	0.32	0.74	14	empty

Compared structures

5Y83 · Crystal structure of YidC from Thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
Q9X1H2 · AlphaFold monomer V2.0 prediction for membrane protein insertase yidc (Q9X1H2) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X1H2
Elsewhere: RCSB PDB 5Y83 · PDBe 5Y83 · UniProt Q9X1H2

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