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AlphaFold monomer V2.0 prediction for membrane protein insertase yidc (Q1R4M9)

Analyse AlphaFold monomer V2.0 prediction for membrane protein insertase yidc (Q1R4M9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q1R4M9
Type: protein
Length: 548 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
Molecule: Membrane protein insertase yidc
UniProt: Q1R4M9
Pockets: 4 · best druggability 0.83

Structure

1 distinct chain · 37% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Membrane protein insertase yidc	protein	548	37% helix, 26% strand	Q1R4M9

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1104	0.83	0.84	80	empty
2	1037	0.74	0.77	79	empty
3	85	0.43	0.79	17	empty
4	63	0.30	0.74	11	empty

Compared structures

3WVF · Crystal structure of YidC from Escherichia coli · an experimental structure of the same protein · chain A against A, TM-score 0.81
3WVF · Crystal structure of yidc from escherichia COLI · an experimental structure of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1R4M9
Elsewhere: UniProt Q1R4M9 · AlphaFold DB Q1R4M9

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