MolNFT v1 · #83859 · protein
Crystal structure of yidc from escherichia COLI
3WVF · Membrane protein insertase yidc: “Crystal structure of yidc from escherichia COLI”. X-ray diffraction, 6 pockets (best druggability 0.68). MolNFT v1 #83859 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3WVF
- Type
- protein
- Length
- 893 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane protein insertase yidc
- UniProt
- Q1R4M9
- Pockets
- 6 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane protein insertase yidc | protein | 448 | 34% helix, 30% strand | Q1R4M9 |
| B | Membrane protein insertase yidc | protein | 445 | 32% helix, 31% strand | Q1R4M9 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 416 | 0.68 | 0.80 | 38 | empty |
| 2 | 497 | 0.65 | 0.76 | 42 | empty |
| 3 | 617 | 0.64 | 0.75 | 68 | empty |
| 4 | 154 | 0.42 | 0.74 | 30 | empty |
| 5 | 84 | 0.35 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 242 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1R4M9
- Elsewhere: RCSB PDB 3WVF · PDBe 3WVF · UniProt Q1R4M9
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