Research workbench
AlphaFold monomer V2.0 prediction for probable multidrug resistance ABC transporter ATP-BINDING/PERMEASE protein yhei (O07550)
Analyse AlphaFold monomer V2.0 prediction for probable multidrug resistance ABC… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O07550
- Type
- protein
- Length
- 585 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF6092B45C6BBe716c5d0098E90A91B0f3f0fe4cA
- Molecule
- Probable multidrug resistance ABC transporter ATP- BINDING/PERMEASE protein yhei
- UniProt
- O07550
- Pockets
- 3 · best druggability 0.47
Structure
1 distinct chain · 66% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable multidrug resistance ABC transporter ATP- BINDING/PERMEASE protein yhei | protein | 585 | 66% helix, 10% strand | O07550 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.47 | 0.75 | 21 | empty |
| 2 | 52 | 0.33 | 0.78 | 11 | empty |
| 3 | 61 | 0.30 | 0.74 | 13 | empty |
Compared structures
- 7M33 · The structure of Bacillus subtilis BmrCD in the inward-facing conformation bound to… · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 7M33 · The structure of bacillus subtilis bmrcd in the inward-facing conformation bound to… · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 8FMV · Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to substrate… · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 8SZC · Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to substrate… · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 8FPF · Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP… · an experimental structure of the same protein · chain A against C, TM-score 0.89
- 8T3K · Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP… · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 8T1P · Heterodimeric ABC transporter BmrCD in the occluded conformation bound to ADPVi… · an experimental structure of the same protein · chain A against C, TM-score 0.84
- 8FHK · Heterodimeric ABC transporter BmrCD in the occluded conformation bound to ATP… · an experimental structure of the same protein · chain A against C, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O07550
- Elsewhere: UniProt O07550 · AlphaFold DB O07550
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