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AlphaFold monomer V2.0 prediction for rhamnogalacturonan exolyase yesx (O31527)

Analyse AlphaFold monomer V2.0 prediction for rhamnogalacturonan exolyase yesx (O31527) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: O31527
Type: protein
Length: 612 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x30B952aA314C16e7020EFc11218c96015a3228B3
Molecule: Rhamnogalacturonan exolyase yesx
UniProt: O31527
Pockets: 5 · best druggability 0.59

Structure

1 distinct chain · 4% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rhamnogalacturonan exolyase yesx	protein	612	4% helix, 38% strand	O31527

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	314	0.59	0.77	40	empty
2	221	0.56	0.79	35	empty
3	203	0.49	0.76	36	empty
4	106	0.40	0.77	21	empty
5	51	0.30	0.76	13	empty

Compared structures

2ZUY · Crystal structure of exotype rhamnogalacturonan lyase YesX · an experimental structure of the same protein · chain A against A, TM-score 0.98
2ZUY · Crystal structure of exotype rhamnogalacturonan lyase yesx · an experimental structure of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O31527
Elsewhere: UniProt O31527 · AlphaFold DB O31527

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