MolNFT v1 · #56930 · protein

Crystal structure of exotype rhamnogalacturonan lyase yesx

2ZUY · Yesx protein: “Crystal structure of exotype rhamnogalacturonan lyase yesx”. X-ray diffraction, 1 ligand (CA), 4 pockets (best druggability 0.64). MolNFT v1 #56930 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2ZUY
Type: protein
Length: 604 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yesx protein
EC: 4.2.2.-
UniProt: O31527
Ligands: CA
Pockets: 4 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Yesx protein (EC 4.2.2.-)	protein	604	3% helix, 38% strand	O31527

Ligands and binding sites

CA · Calcium ion · metal · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	398	0.64	0.78	46	empty
2	276	0.53	0.75	35	empty
3	225	0.49	0.75	40	empty
4	74	0.33	0.75	19	empty

Compared structures

2ZUY · Crystal structure of exotype rhamnogalacturonan lyase YesX · the same entry in another collection · chain A against A, TM-score 1.00
O31527 · AlphaFold monomer V2.0 prediction for rhamnogalacturonan exolyase yesx (O31527) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O31527
Elsewhere: RCSB PDB 2ZUY · PDBe 2ZUY · UniProt O31527

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.