Research workbench
AlphaFold monomer V2.0 prediction for UPF0301 protein VC_0467 (Q9KUP8)
Analyse AlphaFold monomer V2.0 prediction for UPF0301 protein VC_0467 (Q9KUP8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9KUP8
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x08eBD9dAF5f7D0e61018f2c1eBbbB473Df70042f
- Molecule
- UPF0301 protein VC_0467
- UniProt
- Q9KUP8
- Pockets
- 2 · best druggability 0.34
Structure
1 distinct chain · 23% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0301 protein VC_0467 | protein | 187 | 23% helix, 32% strand | Q9KUP8 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.34 | 0.77 | 14 | empty |
| 2 | 55 | 0.31 | 0.76 | 17 | empty |
Compared structures
- 2AJ2 · X-Ray Crystal Structure of Protein VC0467 from Vibrio cholerae. Northeast Structural… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 2AJ2 · X-ray crystal structure of protein VC0467 from vibrio cholerae. northeast structural… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 2HAF · Crystal structure of a putative translation repressor from Vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 2HAF · Crystal structure of a putative translation repressor from vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KUP8
- Elsewhere: UniProt Q9KUP8 · AlphaFold DB Q9KUP8
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