Research workbench
AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase Y (P51584)
Analyse AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase Y (P51584) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P51584
- Type
- protein
- Length
- 1,077 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb3c0C983Fc44934AC589D7131C08a72544EBB92E
- Molecule
- Endo-1,4-beta-xylanase Y
- UniProt
- P51584
- Pockets
- 7 · best druggability 0.71
Structure
1 distinct chain · 25% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase Y | protein | 1077 | 25% helix, 28% strand | P51584 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 926 | 0.71 | 0.76 | 90 | empty |
| 2 | 151 | 0.49 | 0.79 | 28 | empty |
| 3 | 101 | 0.37 | 0.75 | 19 | empty |
| 4 | 105 | 0.33 | 0.72 | 19 | empty |
| 5 | 54 | 0.30 | 0.76 | 14 | empty |
Compared structures
- 2WYS · High resolution crystallographic structure of the Clostridium thermocellum N-terminal… · an experimental structure of the same protein · chain A against B, TM-score 0.48
- 2WYS · High resolution crystallographic structure of the clostridium thermocellum N-terminal… · an experimental structure of the same protein · chain A against B, TM-score 0.48
- 2WZE · High resolution crystallographic structure of the Clostridium thermocellum N-terminal… · an experimental structure of the same protein · chain A against B, TM-score 0.48
- 2WZE · High resolution crystallographic structure of the clostridium thermocellum N-terminal… · an experimental structure of the same protein · chain A against B, TM-score 0.48
- 2W5F · High resolution crystallographic structure of the Clostridium thermocellum N-terminal… · an experimental structure of the same protein · chain A against B, TM-score 0.48
- 2W5F · High resolution crystallographic structure of the clostridium thermocellum N-terminal… · an experimental structure of the same protein · chain A against B, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51584
- Elsewhere: UniProt P51584 · AlphaFold DB P51584
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