UniProt P51584
Endo-1,4-beta-xylanase Y (P51584)
Endo-1,4-beta-xylanase Y (UniProt P51584), EC 3.1.1.73, 3.2.1.8: 37 experimental structures and 1 predicted model on GenesisL1, 10 ligands bound, 144 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P51584
- Protein
- Endo-1,4-beta-xylanase Y
- EC
- 3.1.1.73, 3.2.1.8
- Experimental structures
- 37
- Predicted models
- 1
- Ligands
- 10
- Pockets
- 144 · 7 records with a druggable one
Structures
38 records of P51584 in the MolNFT archive: 37 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1DYO | Xylan-Binding Domain from CBM 22, formally x6b domain | x-ray diffraction | A, B | CA | 1 (best 0.50) |
| 1DYO | Xylan-binding domain from cbm 22, formally X6B domain | x-ray diffraction | A, B | CA | 1 (best 0.50) |
| 1GKK | Feruloyl esterase domain of XynY from clostridium thermocellum | x-ray diffraction | A, B | CD | 9 (best 0.45) |
| 1GKK | Feruloyl esterase domain of xyny from clostridium thermocellum | x-ray diffraction | A, B | CD | 9 (best 0.45) |
| 1GKL | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with ferulic… | x-ray diffraction | A, B | FER, CD | 6 (best 0.45) |
| 1GKL | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with ferulic… | x-ray diffraction | A, B | FER, CD | 6 (best 0.45) |
| 1H6X | The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding… | x-ray diffraction | A | CA | — |
| 1H6X | The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding… | x-ray diffraction | A | CA | — |
| 1H6Y | The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding… | x-ray diffraction | A, B | CA | — |
| 1H6Y | The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding… | x-ray diffraction | A, B | CA | — |
| 1OHZ | Cohesin-Dockerin complex from the cellulosome of Clostridium thermocellum | x-ray diffraction | B | CA, CL | — |
| 1OHZ | Cohesin-dockerin complex from the cellulosome of clostridium thermocellum | x-ray diffraction | B | CA, CL | — |
| 1WB4 | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with sinapinate | x-ray diffraction | A, B | SXX, CD | 8 (best 0.44) |
| 1WB4 | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with sinapinate | x-ray diffraction | A, B | SXX, CD | 8 (best 0.44) |
| 1WB5 | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with syringate | x-ray diffraction | A, B | SYR, CD | 8 (best 0.45) |
| 1WB5 | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with syringate | x-ray diffraction | A, B | SYR, CD | 8 (best 0.45) |
| 1WB6 | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with vanillate | x-ray diffraction | A, B | VXX, CD | 7 (best 0.44) |
| 1WB6 | S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with vanillate | x-ray diffraction | A, B | VXX, CD | 7 (best 0.44) |
| 2CCL | The S45A, T46A mutant of the type I cohesin-dockerin complex from the cellulosome of clostridium… | x-ray diffraction | B, D | CA | 2 (best 0.37) |
| 2CCL | The S45A, T46A mutant of the type I cohesin-dockerin complex from the cellulosome of clostridium… | x-ray diffraction | B, D | CA | 2 (best 0.37) |
| 2W5F | High resolution crystallographic structure of the Clostridium thermocellum N-terminal… | x-ray diffraction | A, B | XYP, CD | 7 (best 0.82) |
| 2W5F | High resolution crystallographic structure of the clostridium thermocellum N-terminal… | x-ray diffraction | A, B | — | — |
| 2WYS | High resolution crystallographic structure of the Clostridium thermocellum N-terminal… | x-ray diffraction | A, B | XYP, CA, PO4 | 7 (best 0.78) |
| 2WYS | High resolution crystallographic structure of the clostridium thermocellum N-terminal… | x-ray diffraction | A, B | — | — |
| 2WZE | High resolution crystallographic structure of the Clostridium thermocellum N-terminal… | x-ray diffraction | A, B | XYP, CA, PO4 | 6 (best 0.82) |
| 2WZE | High resolution crystallographic structure of the clostridium thermocellum N-terminal… | x-ray diffraction | A, B | — | — |
| 3ZI7 | Structure of fae solved by sad from data collected by direct data collection (ddc) using the grob… | x-ray diffraction | A, B | CD | 8 (best 0.50) |
| 3ZI7 | Structure of fae solved by sad from data collected by direct data collection (ddc) using the grob… | x-ray diffraction | A, B | — | — |
| 4BAG | Feruloyl Esterase Domain of XYNY from Clostridium thermocellum after exposure to 266nm UV laser | x-ray diffraction | A, B | CD | 8 (best 0.58) |
| 4BAG | Feruloyl esterase domain of xyny from clostridium thermocellum after exposure to 266NM UV laser | x-ray diffraction | A, B | — | — |
| 4H35 | Feruloyl Esterase Domain of XYNY from Clostridium thermocellum before exposure to 266nm UV laser | x-ray diffraction | A, B | CD | 8 (best 0.55) |
| 4H35 | Feruloyl esterase domain of xyny from clostridium thermocellum before exposure to 266NM UV laser | x-ray diffraction | A, B | — | — |
| 5FXM | Structure of FAE solved by SAD from data collected by Direct Data Collection (DDC) using the ESRF… | x-ray diffraction | A | CD | 2 (best 0.36) |
| 5FXM | Structure of fae solved by sad from data collected by direct data collection (ddc) using the esrf… | x-ray diffraction | A | — | — |
| 6FJ4 | Structure of FAE solved by SAD from data collected at the peak of the Selenium absorption edge on… | x-ray diffraction | A | CD, SO4 | 2 (best 0.46) |
| 6FJ4 | Structure of fae solved by sad from data collected at the peak of the selenium absorption edge on… | x-ray diffraction | A | CD, SO4 | — |
| 6Y8G | selenomethionine derivative of ferulic acid esterase (FAE) | x-ray diffraction | AAA, BBB | CD | 7 (best 0.44) |
| P51584 | AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase Y (P51584) | predicted | A | — | 7 (best 0.71) |
Ligands
- CD · Cadmium ion · in 18 records
- CA · Calcium ion · in 12 records
- XYP · beta-D-xylopyranose · in 3 records
- CL · Chloride ion · in 2 records
- FER · 3-(4-hydroxy-3-methoxyphenyl)-2-propenoic acid · in 2 records
- PO4 · Phosphate ion · in 2 records
- SO4 · Sulfate ion · in 2 records
- SXX · Sinapinate · in 2 records
- SYR · Syringate · in 2 records
- VXX · Methyl vanillate · in 2 records
Experiment against prediction
- 2W5F chain B against the predicted model P51584: TM-score 1.00, RMSD 0.50 Å
- 2W5F chain B against the predicted model P51584: TM-score 1.00, RMSD 0.50 Å
- 2W5F chain A against the predicted model P51584: TM-score 1.00, RMSD 0.59 Å
- 2W5F chain A against the predicted model P51584: TM-score 1.00, RMSD 0.59 Å
- 1H6Y chain A against the predicted model P51584: TM-score 0.99, RMSD 0.34 Å
- 1H6Y chain A against the predicted model P51584: TM-score 0.99, RMSD 0.34 Å
- 2WYS chain A against the predicted model P51584: TM-score 0.99, RMSD 0.65 Å
- 2WYS chain A against the predicted model P51584: TM-score 0.99, RMSD 0.65 Å
- 2WZE chain A against the predicted model P51584: TM-score 0.99, RMSD 0.66 Å
- 2WZE chain A against the predicted model P51584: TM-score 0.99, RMSD 0.66 Å
Elsewhere
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