MolNFT v1 · #148861 · protein
Structure of fae solved by sad from data collected at the peak of the selenium absorption edge on ID30B
6FJ4 · Endo-1,4-beta-xylanase Y: “Structure of fae solved by sad from data collected at the peak of the selenium absorption edge on ID30B”. X-ray diffraction, 2 ligands (CD, SO4), 2 pockets (best druggability 0.46). MolNFT v1 #148861 on…
- PDB
- 6FJ4
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-xylanase Y
- EC
- 3.2.1.8
- UniProt
- P51584
- Ligands
- CD, SO4
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase Y (EC 3.2.1.8) | protein | 283 | 33% helix, 19% strand | P51584 |
Ligands and binding sites
- CD · Cadmium ion · metal · 5 copies · chains A
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.46 | 0.83 | 22 | empty |
| 2 | 73 | 0.35 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 9 modified (engineered, phosphorylation).
Compared structures
- 6FJ4 · Structure of FAE solved by SAD from data collected at the peak of the Selenium absorption… · the same entry in another collection · chain A against A, TM-score 1.00
- P51584 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase Y (P51584) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51584
- Elsewhere: RCSB PDB 6FJ4 · PDBe 6FJ4 · UniProt P51584
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.