Research workbench
AlphaFold monomer V2.0 prediction for xylosyltransferase 1 (Q86Y38)
Analyse AlphaFold monomer V2.0 prediction for xylosyltransferase 1 (Q86Y38) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q86Y38
- Type
- protein
- Length
- 959 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8F642c1bE4c8282d76b08B1077D11CCF2e2D16DB
- Molecule
- Xylosyltransferase 1
- UniProt
- Q86Y38
- Pockets
- 9 · best druggability 0.76
Structure
1 distinct chain · 25% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylosyltransferase 1 | protein | 959 | 25% helix, 19% strand | Q86Y38 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 869 | 0.76 | 0.79 | 78 | empty |
| 2 | 520 | 0.69 | 0.79 | 51 | empty |
| 3 | 158 | 0.47 | 0.77 | 22 | empty |
| 4 | 99 | 0.46 | 0.80 | 16 | empty |
| 5 | 51 | 0.46 | 0.85 | 13 | empty |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 6EJ7 · Human xylosyltransferase 1 in complex with udp-xylose and peptide qeeegagggqgg · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJ7 · Human Xylosyltransferase 1 in complex with UDP-xylose and peptide QEEEGAGGGQGG · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJ8 · Human Xylosyltransferase 1 in complex with peptide QEEEGSGGGQGG · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJ8 · Human xylosyltransferase 1 in complex with peptide qeeegsgggqgg · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJB · Human xylosyltransferase 1 in complex with peptide qeeegsaggqgg · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJB · Human Xylosyltransferase 1 in complex with peptide QEEEGSAGGQGG · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJ9 · Human xylosyltransferase 1 in complex with peptide qepegsgggqgg · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJ9 · Human Xylosyltransferase 1 in complex with peptide QEPEGSGGGQGG · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJC · Human xylosyltransferase 1 in complex with peptide qeeegsgvgqgg · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6EJC · Human Xylosyltransferase 1 in complex with peptide QEEEGSGVGQGG · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6FOA · Human xylosyltransferase 1 apo structure · an experimental structure of the same protein · chain A against A, TM-score 0.73
- 6FOA · Human Xylosyltransferase 1 apo structure · an experimental structure of the same protein · chain A against A, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q86Y38
- Elsewhere: UniProt Q86Y38 · AlphaFold DB Q86Y38
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