Research workbench
AlphaFold monomer V2.0 prediction for D-xylose-proton symporter (P0AGF4)
Analyse AlphaFold monomer V2.0 prediction for D-xylose-proton symporter (P0AGF4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AGF4
- Type
- protein
- Length
- 491 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x76C26cdb36EA84716AfEb69eb52d8dD83128e409
- Molecule
- D-xylose-proton symporter
- UniProt
- P0AGF4
- Pockets
- 1 · best druggability 0.74
Structure
1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-xylose-proton symporter | protein | 491 | 81% helix, 0% strand | P0AGF4 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 771 | 0.74 | 0.79 | 75 | empty |
Compared structures
- 4JA4 · Inward open conformation of the xylose transporter xyle from E. COLI · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 4JA4 · Inward open conformation of the xylose transporter XylE from E. coli · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 4JA3 · Partially occluded inward open conformation of the xylose transporter XylE from E. coli · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 4JA3 · Partially occluded inward open conformation of the xylose transporter xyle from E. COLI · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 4QIQ · Crystal structure of D-xylose-proton symporter · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 4QIQ · Crystal structure of D-xylose-proton symporter · an experimental structure of the same protein · chain A against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGF4
- Elsewhere: UniProt P0AGF4 · AlphaFold DB P0AGF4
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