Research workbench
AlphaFold monomer V2.0 prediction for xylose isomerase (P12851)
Analyse AlphaFold monomer V2.0 prediction for xylose isomerase (P12851) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P12851
- Type
- protein
- Length
- 394 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEa58c7534E5701aA8370E0fAEb19b7e14653e69c
- Molecule
- Xylose isomerase
- UniProt
- P12851
- Pockets
- 3 · best druggability 0.63
Structure
1 distinct chain · 49% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase | protein | 394 | 49% helix, 9% strand | P12851 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 464 | 0.63 | 0.77 | 43 | empty |
| 2 | 74 | 0.50 | 0.84 | 15 | empty |
| 3 | 167 | 0.45 | 0.75 | 19 | empty |
Compared structures
- 2XIM · Arginine residues as stabilizing elements in proteins · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2XIM · Arginine residues as stabilizing elements in proteins · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5XIN · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5XIN · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 8XIM · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 8XIM · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3XIN · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3XIN · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1XIN · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1XIN · Protein engineering of xylose (glucose) isomerase from actinoplanes missouriensis. 1.… · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12851
- Elsewhere: UniProt P12851 · AlphaFold DB P12851
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