Research workbench
AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein VTA1 (Q06263)
Analyse AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q06263
- Type
- protein
- Length
- 330 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb4D2d9c96b0D792d0b77e7147D724cc1F801ae58
- Molecule
- Vacuolar protein sorting-associated protein VTA1
- UniProt
- Q06263
- Pockets
- 5 · best druggability 0.59
Structure
1 distinct chain · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar protein sorting-associated protein VTA1 | protein | 330 | 61% helix, 0% strand | Q06263 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.59 | 0.76 | 34 | empty |
| 2 | 239 | 0.52 | 0.76 | 22 | empty |
| 3 | 233 | 0.52 | 0.76 | 35 | empty |
| 4 | 101 | 0.40 | 0.76 | 18 | empty |
| 5 | 51 | 0.25 | 0.73 | 14 | empty |
Compared structures
- 2LUH · NMR structure of the Vta1-Vps60 complex · an experimental structure of the same protein · chain A against A, TM-score 0.47
- 2LUH · NMR structure of the VTA1-VPS60 complex · an experimental structure of the same protein · chain A against A, TM-score 0.47
- 2RKK · Crystal Structure of S.cerevisiae Vta1 N-terminal domain · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 2RKK · Crystal structure of S.CEREVISIAE VTA1 N-terminal domain · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 5H7P · NMR structure of the Vta1NTD-Did2(176-204) complex · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 5H7P · NMR structure of the VTA1NTD-DID2(176-204) complex · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 5XMK · Cryo-EM structure of the ATP-bound Vps4 mutant-E233Q complex with Vta1 (masked) · an experimental structure of the same protein · chain A against I, TM-score 0.16
- 5XMK · Cryo-EM structure of the ATP-bound VPS4 mutant-E233Q complex with VTA1 (masked) · an experimental structure of the same protein · chain A against G, TM-score 0.16
- 2RKL · Crystal Structure of S.cerevisiae Vta1 C-terminal domain · an experimental structure of the same protein · chain A against A, TM-score 0.15
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06263
- Elsewhere: UniProt Q06263 · AlphaFold DB Q06263
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.