Research workbench
AlphaFold monomer V2.0 prediction for nitrogenase vanadium-iron protein delta chain (P16857)
Analyse AlphaFold monomer V2.0 prediction for nitrogenase vanadium-iron protein delta… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P16857
- Type
- protein
- Length
- 113 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC8dF636DBC08E21eD2d86C34d2418bD10A06e71a
- Molecule
- Nitrogenase vanadium-iron protein delta chain
- UniProt
- P16857
- Pockets
- 1 · best druggability 0.34
Structure
1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitrogenase vanadium-iron protein delta chain | protein | 113 | 77% helix, 0% strand | P16857 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.34 | 0.78 | 14 | empty |
Compared structures
- 7ADR · CO bound as bridging ligand at the active site of vanadium nitrogenase VFe protein · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7ADR · Co bound as bridging ligand at the active site of vanadium nitrogenase vfe protein · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7ADY · CO-removed state of the active site of vanadium nitrogenase VFe protein · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7ADY · Co-removed state of the active site of vanadium nitrogenase vfe protein · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 5N6Y · Azotobacter vinelandii vanadium nitrogenase · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 5N6Y · Azotobacter vinelandii vanadium nitrogenase · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7AIZ · Vanadium nitrogenase VFe protein, high CO state · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7AIZ · Vanadium nitrogenase vfe protein, high co state · an experimental structure of the same protein · chain A against C, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16857
- Elsewhere: UniProt P16857 · AlphaFold DB P16857
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