Research workbench
AlphaFold monomer V2.0 prediction for U6 snrna phosphodiesterase (Q9BQ65)
Analyse AlphaFold monomer V2.0 prediction for U6 snrna phosphodiesterase (Q9BQ65) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9BQ65
- Type
- protein
- Length
- 265 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xba10dCAB85f8E44298b6025C21224eB1B2a215c2
- Molecule
- U6 snrna phosphodiesterase
- UniProt
- Q9BQ65
- Pockets
- 2 · best druggability 0.74
Structure
1 distinct chain · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U6 snrna phosphodiesterase | protein | 265 | 29% helix, 23% strand | Q9BQ65 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 975 | 0.74 | 0.77 | 64 | empty |
| 2 | 61 | 0.35 | 0.78 | 15 | empty |
Compared structures
- 6D2Z · Structure of human USB1 with uridine-adenosine, inactive H208Q mutant · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 6D2Z · Structure of human Usb1 with uridine-adenosine, inactive H208Q mutant · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 6D31 · Structure of human USB1 with adenosine 5'-monophosphate · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 6D31 · Structure of human Usb1 with adenosine 5'-monophosphate · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 6D30 · Structure of human USB1 with uridine-uridine, inactive H208Q mutant · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 6D30 · Structure of human Usb1 with uridine-uridine, inactive H208Q mutant · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 4H7W · Crystal structure of human C16ORF57 · an experimental structure of the same protein · chain A against A, TM-score 0.69
- 4H7W · Crystal Structure of Human C16orf57 · an experimental structure of the same protein · chain A against A, TM-score 0.69
- 5V1M · Structure of human Usb1 with uridine 5'-monophosphate · an experimental structure of the same protein · chain A against A, TM-score 0.69
- 5V1M · Structure of human USB1 with uridine 5'-monophosphate · an experimental structure of the same protein · chain A against A, TM-score 0.69
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BQ65
- Elsewhere: UniProt Q9BQ65 · AlphaFold DB Q9BQ65
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