MolNFT v2 · #137546 · protein

Structure of human Usb1 with uridine 5'-monophosphate

5V1M: “Structure of human Usb1 with uridine 5'-monophosphate”. X-ray diffraction at 1.47, 2 ligands (U5P, CL). MolNFT v2 #137546 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5V1M
Type: protein
Length: 185 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.47
Source: Homo sapiens
UniProt: Q9BQ65
Ligands: U5P, CL

Structure

x-ray diffraction · resolution 1.47 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	185	—	Q9BQ65

Ligands and binding sites

U5P · Uridine-5'-monophosphate · ligand · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5V1M · Structure of human USB1 with uridine 5'-monophosphate · the same entry in another collection · chain A against A, TM-score 1.00
Q9BQ65 · AlphaFold monomer V2.0 prediction for U6 snrna phosphodiesterase (Q9BQ65) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9BQ65
Elsewhere: RCSB PDB 5V1M · PDBe 5V1M · UniProt Q9BQ65

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