Research workbench
AlphaFold monomer V2.0 prediction for tRNA (CYTIDINE(56)-2'-O)-methyltransferase (Q9HJN6)
Analyse AlphaFold monomer V2.0 prediction for tRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9HJN6
- Type
- protein
- Length
- 339 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- TRNA (CYTIDINE(56)-2'-O)-methyltransferase
- UniProt
- Q9HJN6
- Pockets
- 3 · best druggability 0.54
Structure
1 distinct chain · 52% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA (CYTIDINE(56)-2'-O)-methyltransferase | protein | 339 | 52% helix, 14% strand | Q9HJN6 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.54 | 0.82 | 22 | empty |
| 2 | 220 | 0.52 | 0.77 | 34 | empty |
| 3 | 50 | 0.26 | 0.74 | 15 | empty |
Compared structures
- 8X6J · The X-ray structure of N-terminal catalytic domain of Thermoplasma acidophilum tRNA… · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 8X6K · The X-ray structure of N-terminal catalytic domain of Thermoplasma acidophilum tRNA… · an experimental structure of the same protein · chain A against A, TM-score 0.44
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HJN6
- Elsewhere: UniProt Q9HJN6 · AlphaFold DB Q9HJN6
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