Research workbench
AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase TRIM39 (Q9HCM9)
Analyse AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase TRIM39… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9HCM9
- Type
- protein
- Length
- 518 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- E3 ubiquitin-protein ligase TRIM39
- UniProt
- Q9HCM9
- Pockets
- 4 · best druggability 0.55
Structure
1 distinct chain · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase TRIM39 | protein | 518 | 42% helix, 19% strand | Q9HCM9 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.55 | 0.80 | 25 | empty |
| 2 | 159 | 0.50 | 0.78 | 17 | empty |
| 3 | 50 | 0.38 | 0.80 | 12 | empty |
| 4 | 70 | 0.36 | 0.77 | 13 | empty |
Compared structures
- 2DID · One sequence two fold ? : Correct fold of the zf-B-box domain from human tripartite motif… · an experimental structure of the same protein · chain A against A, TM-score 0.09
- 2DID · One sequence two fold ? : correct fold of the zf-B-box domain from human tripartite motif… · an experimental structure of the same protein · chain A against A, TM-score 0.09
- 2DIF · One sequence two fold ? : Miss fold of the zf-B-box domain from human tripartite motif… · an experimental structure of the same protein · chain A against A, TM-score 0.08
- 2DIF · One sequence two fold ? : miss fold of the zf-B-box domain from human tripartite motif… · an experimental structure of the same protein · chain A against A, TM-score 0.08
- 2ECJ · Solution structure of the RING domain of the human tripartite motif-containing protein 39 · an experimental structure of the same protein · chain A against A, TM-score 0.08
- 2ECJ · Solution structure of the ring domain of the human tripartite motif- containing protein 39 · an experimental structure of the same protein · chain A against A, TM-score 0.08
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HCM9
- Elsewhere: UniProt Q9HCM9 · AlphaFold DB Q9HCM9
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