MolNFT v1 · #35474 · protein

Solution structure of the ring domain of the human tripartite motif- containing protein 39

2ECJ · Tripartite motif-containing protein 39: “Solution structure of the ring domain of the human tripartite motif- containing protein 39”. Solution nmr, 1 ligand (ZN), 1 pocket (best druggability 0.43). MolNFT v1 #35474 on GenesisL1: 3D…

PDB: 2ECJ
Type: protein
Length: 58 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tripartite motif-containing protein 39
UniProt: Q9HCM9
Ligands: ZN
Pockets: 1 · best druggability 0.43

Structure

solution nmr · 1 distinct chain · 12% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tripartite motif-containing protein 39	protein	58	12% helix, 3% strand	Q9HCM9

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.43	0.77	19	empty

Compared structures

2ECJ · Solution structure of the RING domain of the human tripartite motif-containing protein 39 · the same entry in another collection · chain A against A, TM-score 1.00
Q9HCM9 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase TRIM39 (Q9HCM9) · a predicted model of the same protein · chain A against A, TM-score 0.49

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9HCM9
Elsewhere: RCSB PDB 2ECJ · PDBe 2ECJ · UniProt Q9HCM9

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