Research workbench
AlphaFold monomer V2.0 prediction for trafficking protein particle complex II-specific subunit 130 (Q03660)
Analyse AlphaFold monomer V2.0 prediction for trafficking protein particle complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q03660
- Type
- protein
- Length
- 1,102 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1ca26b2054BD7B7ddbC95b4914Ca7303754fF64e
- Molecule
- Trafficking protein particle complex II-specific subunit 130
- UniProt
- Q03660
- Pockets
- 13 · best druggability 0.78
Structure
1 distinct chain · 36% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trafficking protein particle complex II-specific subunit 130 | protein | 1102 | 36% helix, 31% strand | Q03660 |
Pockets
13 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 984 | 0.78 | 0.80 | 69 | empty |
| 2 | 809 | 0.73 | 0.78 | 63 | empty |
| 3 | 197 | 0.48 | 0.75 | 20 | empty |
| 4 | 57 | 0.48 | 0.84 | 15 | empty |
| 5 | 104 | 0.47 | 0.79 | 19 | empty |
Compared structures
- 7U06 · Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite… · an experimental structure of the same protein · chain A against B, TM-score 0.53
- 7U05 · Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/closed state (composite… · an experimental structure of the same protein · chain A against B, TM-score 0.48
- 7E93 · Intact TRAPPII (state III). · an experimental structure of the same protein · chain A against T, TM-score 0.47
- 7E2C · Monomer of trappii (open) · an experimental structure of the same protein · chain A against I, TM-score 0.47
- 7E2C · Monomer of TRAPPII (open) · an experimental structure of the same protein · chain A against I, TM-score 0.47
- 7E94 · Intact TRAPPII (State II) · an experimental structure of the same protein · chain A against T, TM-score 0.47
- 7E94 · Intact trappii (state II) · an experimental structure of the same protein · chain A against T, TM-score 0.47
- 7E93 · Intact trappii (state III). · an experimental structure of the same protein · chain A against I, TM-score 0.47
- 7EA3 · Intact Ypt32-TRAPPII (dimer). · an experimental structure of the same protein · chain A against I, TM-score 0.44
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03660
- Elsewhere: UniProt Q03660 · AlphaFold DB Q03660
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