Research workbench
AlphaFold monomer V2.0 prediction for tryptophanase (P28796)
Analyse AlphaFold monomer V2.0 prediction for tryptophanase (P28796) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P28796
- Type
- protein
- Length
- 467 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x77Cd30004b5B148f427907D8Ee0d834Cc4230E46
- Molecule
- Tryptophanase
- UniProt
- P28796
- Pockets
- 4 · best druggability 0.74
Structure
1 distinct chain · 44% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tryptophanase | protein | 467 | 44% helix, 15% strand | P28796 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 736 | 0.74 | 0.80 | 71 | empty |
| 2 | 370 | 0.57 | 0.75 | 39 | empty |
| 3 | 103 | 0.44 | 0.78 | 19 | empty |
| 4 | 83 | 0.38 | 0.77 | 18 | empty |
Compared structures
- 5W1B · Tryptophan indole-lyase · an experimental structure of the same protein · chain A against C, TM-score 0.99
- 5W1B · Tryptophan indole-lyase · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 9BNJ · Proteus vulgaris tryptophan indole-lyase aminoacrylate complex with benzimidazole · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 8V2K · Proteus vulgaris tryptophan indole-lyase complexed with L-alanine · an experimental structure of the same protein · chain A against C, TM-score 0.99
- 8V4A · Proteus vulgaris tryptophan indole-lyase complexed with L-ethionine · an experimental structure of the same protein · chain A against C, TM-score 0.99
- 1AX4 · Tryptophanase from proteus vulgaris · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1AX4 · Tryptophanase from proteus vulgaris · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28796
- Elsewhere: UniProt P28796 · AlphaFold DB P28796
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