Research workbench
AlphaFold monomer V2.0 prediction for transmembrane protein 184 homolog C30D11.06C (Q09906)
Analyse AlphaFold monomer V2.0 prediction for transmembrane protein 184 homolog… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q09906
- Type
- protein
- Length
- 426 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- Transmembrane protein 184 homolog C30D11.06C
- UniProt
- Q09906
- Pockets
- 6 · best druggability 0.65
Structure
1 distinct chain · 66% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transmembrane protein 184 homolog C30D11.06C | protein | 426 | 66% helix, 5% strand | Q09906 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 459 | 0.65 | 0.77 | 42 | empty |
| 2 | 174 | 0.51 | 0.77 | 24 | empty |
| 3 | 124 | 0.46 | 0.78 | 20 | empty |
| 4 | 98 | 0.34 | 0.74 | 24 | empty |
| 5 | 57 | 0.30 | 0.75 | 12 | empty |
Compared structures
- 7YO8 · Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2 · an experimental structure of the same protein · chain A against A, TM-score 0.16
- 6AAF · Crystal structure of fission yeast ATG8 complexed with the helical aim of HFL1. · an experimental structure of the same protein · chain A against B, TM-score 0.05
- 6AAF · Crystal structure of fission yeast Atg8 complexed with the helical AIM of Hfl1. · an experimental structure of the same protein · chain A against B, TM-score 0.05
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q09906
- Elsewhere: UniProt Q09906 · AlphaFold DB Q09906
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