MolNFT v1 · #142631 · protein

Crystal structure of fission yeast ATG8 complexed with the helical aim of HFL1.

6AAF · Autophagy-related protein 8: “Crystal structure of fission yeast ATG8 complexed with the helical aim of HFL1.”. X-ray diffraction. MolNFT v1 #142631 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6AAF
Type: protein
Length: 134 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Autophagy-related protein 8; Transmembrane protein 184 homolog C30D11.06C
UniProt: O94272, Q09906

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Autophagy-related protein 8	protein	112	35% helix, 23% strand	O94272
B	Transmembrane protein 184 homolog C30D11.06C	protein	22	41% helix, 0% strand	Q09906

Interfaces

1 interface between chains.

A–B · 1052 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6AAF · Crystal structure of fission yeast Atg8 complexed with the helical AIM of Hfl1. · the same entry in another collection · chain A against A, TM-score 1.00
O94272 · AlphaFold monomer V2.0 prediction for autophagy-related protein 8 (O94272) · a predicted model of the same protein · chain A against A, TM-score 0.98
Q09906 · AlphaFold monomer V2.0 prediction for transmembrane protein 184 homolog C30D11.06C… · a predicted model of the same protein · chain B against A, TM-score 0.53

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O94272
Every structure of UniProt Q09906
Elsewhere: RCSB PDB 6AAF · PDBe 6AAF · UniProt O94272 · UniProt Q09906

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