Research workbench
AlphaFold monomer V2.0 prediction for RNA 2',3'-cyclic phosphodiesterase (O57823)
Analyse AlphaFold monomer V2.0 prediction for RNA 2',3'-cyclic phosphodiesterase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O57823
- Type
- protein
- Length
- 184 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb9595fEff3a9863942Eb06A0EA3017ECa562408c
- Molecule
- RNA 2',3'-cyclic phosphodiesterase
- UniProt
- O57823
- Pockets
- 1 · best druggability 0.60
Structure
1 distinct chain · 32% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA 2',3'-cyclic phosphodiesterase | protein | 184 | 32% helix, 45% strand | O57823 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 284 | 0.60 | 0.78 | 33 | empty |
Compared structures
- 1VDX · Crystal structure of a pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1VDX · Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1VGJ · Crystal structure of 2'-5' RNA ligase from pyrococcus horikoshii · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1VGJ · Crystal structure of 2'-5' RNA ligase from Pyrococcus horikoshii · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57823
- Elsewhere: UniProt O57823 · AlphaFold DB O57823
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