Research workbench
AlphaFold monomer V2.0 prediction for transposable element TC3 transposase (P34257)
Analyse AlphaFold monomer V2.0 prediction for transposable element TC3 transposase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P34257
- Type
- protein
- Length
- 329 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9188600a0FCa2914254C94299b1bd9721Bc4D500
- Molecule
- Transposable element TC3 transposase
- UniProt
- P34257
- Pockets
- 3 · best druggability 0.46
Structure
1 distinct chain · 47% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposable element TC3 transposase | protein | 329 | 47% helix, 8% strand | P34257 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.46 | 0.77 | 24 | empty |
| 2 | 128 | 0.40 | 0.75 | 19 | empty |
| 3 | 51 | 0.28 | 0.75 | 11 | empty |
Compared structures
- 1U78 · Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 1U78 · Structure of the bipartite DNA-binding domain of TC3 transposase bound to transposon DNA · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 1TC3 · Transposase TC3A1-65 from caenorhabditis elegans · an experimental structure of the same protein · chain A against C, TM-score 0.15
- 1TC3 · Transposase TC3A1-65 from caenorhabditis elegans · an experimental structure of the same protein · chain A against C, TM-score 0.15
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P34257
- Elsewhere: UniProt P34257 · AlphaFold DB P34257
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