Research workbench
AlphaFold monomer V2.0 prediction for serine--tRNA ligase, cytoplasmic (Q9HGT6)
Analyse AlphaFold monomer V2.0 prediction for serine--tRNA ligase, cytoplasmic (Q9HGT6) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9HGT6
- Type
- protein
- Length
- 462 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- Serine--tRNA ligase, cytoplasmic
- UniProt
- Q9HGT6
- Pockets
- 5 · best druggability 0.73
Structure
1 distinct chain · 43% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine--tRNA ligase, cytoplasmic | protein | 462 | 43% helix, 21% strand | Q9HGT6 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 612 | 0.73 | 0.80 | 66 | empty |
| 2 | 202 | 0.46 | 0.74 | 25 | empty |
| 3 | 142 | 0.44 | 0.76 | 22 | empty |
| 4 | 79 | 0.38 | 0.77 | 19 | empty |
| 5 | 62 | 0.28 | 0.73 | 19 | empty |
Compared structures
- 3QO8 · Crystal Structure of seryl-tRNA synthetase from Candida albicans · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3QO8 · Crystal structure of seryl-tRNA synthetase from candida albicans · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3QNE · Candida albicans seryl-tRNA synthetase · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3QNE · Candida albicans seryl-tRNA synthetase · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3QO7 · Crystal structure of the seryl-tRNA synthetase from Candida albicans · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 3QO7 · Crystal structure of the seryl-tRNA synthetase from candida albicans · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 3QO5 · Crystal Structure of the seryl-tRNA synthetase from Candida albicans · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 3QO5 · Crystal structure of the seryl-tRNA synthetase from candida albicans · an experimental structure of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HGT6
- Elsewhere: UniProt Q9HGT6 · AlphaFold DB Q9HGT6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.